rs31597965 SNP Detail

Summary

• ID
  rs31597965
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129474217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGG TCTGACTGGA CTTCTCAGCC
  K
  AGAGCCTGGC TGAGGGTTAG CTCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45551330	mCV25348970	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss135887668	ENSMUSSNP5214051	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320962752	CHEV_3_129383486	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31597965					SNP	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129474217 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585059	regulatory region 585059			321 bp distal
Rr585060	regulatory region 585060			within coordinates
Rr585061	regulatory region 585061			876 bp proximal
Rr585062	regulatory region 585062			1268 bp proximal
Rr585063	regulatory region 585063			1879 bp proximal