rs31597290 SNP Detail

Summary

• ID
  rs31597290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78855104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCACACAC AAAAAAAGAC
  ATGCAATGAG ATTTCTTTCG GGAATACTTT AGTGGAATTA GTGACGGCAC CTGTCACCCT
  TGCCTTGTAA AGCACAACAC CTGTGGAAAA GGACACAAAA TGCCATGAGA AACTTACAGT
  GTTACAAGCT TTGGAAGTAG ACCACATGGG CGCCATACTA AAGGGTGATT TAGCTCAAAA
  R
  AGTGAGAAAA AAGACACATT GAGGAAAATG GTCCAGCCTG TAAAATGACG AAGGATGAAG
  ATTTGCTGTC TGCTATTACT GGGGAAAACT GACTGAAGAA CAGGTCTAAC ATCTTCAAAA
  ATTATTAGAT TAAGCCAGGG GTAGACCAGC ATACCTATAG TCCTGCACTT AGGACCCTGA
  CTCAAGAGTA TCATAAGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45549875	mCV24564896	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss135365327	ENSMUSSNP1900011	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs31597290					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78855104 () rs orientation: forward

Symbol	Name	Function Class
Gm65474	predicted gene, 65474	449 bp upstream
Rr578444	regulatory region 578444	359 bp proximal
Rr578445	regulatory region 578445	460 bp proximal
Rr578446	regulatory region 578446	628 bp proximal
Rr578447	regulatory region 578447	1714 bp proximal
Rr578448	regulatory region 578448	1804 bp proximal