rs31597150 SNP Detail

Summary

• ID
  rs31597150
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38540066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT CCTAATAGAA AAACTAACAG
  K
  AGCTTACATA CAATTTTATC AAGTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45549780	mCV22716832	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss134837231	ENSMUSSNP4190479	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320719968	CHEV_3_38384839	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31597150					SNP	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38540066 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	1073 bp upstream
Cpgi13104	CpG island 13104	511 bp distal
Gm65619	predicted gene, 65619	434 bp downstream
Rr397648	regulatory region 397648	867 bp downstream
Rr575675	regulatory region 575675	1671 bp distal
Rr575676	regulatory region 575676	802 bp distal
Rr575677	regulatory region 575677	82 bp distal
Tssr28929	transcription start site region 28929	706 bp downstream
Tssr33057	transcription start site region 33057	1126 bp upstream
Tssr33058	transcription start site region 33058	1095 bp upstream
Tssr33059	transcription start site region 33059	1053 bp upstream