rs31597000 SNP Detail

Summary

• ID
  rs31597000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121079388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTATTTGG GCTTACAGTC CAGAGGGATA AGTTTCCTGG
  TGGTGAATGG GCACACCAGC GTTCAGCAGG TGTAGCTACC TAGCGGCAGG AACAGCAATC
  Y
  AGTTGTTCAC ATCTAGAACA GCAAGTGCAA AGCAGACAAT GACTGTAAAT ACGAGAGGCT
  CTTTACTCCC AAGGCTCATC CCCAGCGGTA AGACTTCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45550922	mCV23993553	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss135717549	ENSMUSSNP5976305	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31597000					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121079388 () rs orientation: forward

Symbol	Name	Function Class
Rr375663	regulatory region 375663	1988 bp upstream
Rr584034	regulatory region 584034	72 bp distal
Rr584035	regulatory region 584035	739 bp proximal
Rr584036	regulatory region 584036	1292 bp proximal
Rr584037	regulatory region 584037	1625 bp proximal