rs3159640 SNP Detail

Summary

• ID
  rs3159640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100870802 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCAGC CCTATTTTAT ATTATAATGT
  Y
  TATTTTCATT ATCTATAGGA TCCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320850395	CHEV_3_100767409	CHEVERUD	SCREENING_POP	r	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs3159640					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100870802 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66499	predicted gene, 66499			500 bp upstream
Rr581933	regulatory region 581933			670 bp proximal
Rr581934	regulatory region 581934			762 bp proximal
Ttf2	transcription termination factor, RNA polymerase II			Intron
				Noncoding-Transcript-Variant