rs31595832 SNP Detail

Summary

• ID
  rs31595832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87701169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGA AACAATCAGG AGGCTGGACT
  Y
  TGGTTTGAAT GGACAGGCCG GGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45551410	mCV23486614	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss135468209	ENSMUSSNP3248523	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31595832					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87701169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13339	CpG island 13339	601 bp proximal
Ntrk1	neurotrophic tyrosine kinase, receptor, type 1	Intron
Rr579548	regulatory region 579548	1290 bp proximal
Rr579549	regulatory region 579549	1386 bp proximal
Rr579550	regulatory region 579550	1879 bp proximal
Tssr33956	transcription start site region 33956	1344 bp downstream