rs31595366 SNP Detail

Summary

• ID
  rs31595366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87662308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTTCTTC CCTATCTGAG CTTCCATAAT CTCTTTGACC
  CCACCTGACT CTCCAGTGTC TTCTAACCCA TTTGACCCTC CTGTCTCTTC TACCCTACCT
  R
  AGCTGCCTCT GTTCCCTCCA TCCCACCTGG GCCTCCTCTG TCTCTCCTAC AAAATGGAGG
  AGTCTGGCAA CAAAGTCAAG CCCATAGTGG TGGCCCCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45550201	mCV25326085	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss135468095	ENSMUSSNP5875309	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A	A
ss320835362	CHEV_3_87558923	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31595366					SNP	G	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87662308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13335	CpG island 13335	862 bp proximal
Pear1	platelet endothelial aggregation receptor 1	Intron
Rr579538	regulatory region 579538	1119 bp proximal
Tssr33951	transcription start site region 33951	1742 bp upstream