rs31595365 SNP Detail

Summary

• ID
  rs31595365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127622904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTATTTC ACTGACTTGA
  TTTCCAGCTC TGTGTGACAT GAGCCAAGCC AACAGAGAGC GAGGTAATAA CATGGTAAGG
  AACAGACTCC CATTCACCAA GTACACAGGA TAGGCCCTGA ACTGACCTAA TTCTCGCACG
  TGTCTCAGAG ACATTTCCTT TCCTCAATAC TCCTACGGCT ACTGTTACCC TAGAGAGATC
  Y
  CCACTGTCCA GTATGACAGC CACTAGCACT TGAGATGCAA CCAGTCTGAA TTTGGAGGGC
  TATAAAGTGT CAAATTGAAC TGGATTCCAA AGAGAGTACA AAAGTAACTG AAATATCTCC
  TCGAGTAACT AAGCTCTGCA GCATATCTGC ATGACTAGAT ATGACGAACG TTCTGATCGC
  CTTTGATTTG TCCTCTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45550200	mCV23994002	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135872288	ENSMUSSNP6118003	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	T
ss320957250	CHEV_3_127532173	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31595365					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127622904 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	300 bp downstream
Rr584870	regulatory region 584870	1739 bp distal
Rr584871	regulatory region 584871	964 bp proximal
Rr584872	regulatory region 584872	1554 bp proximal