rs31592819 SNP Detail

Summary

• ID
  rs31592819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126454693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCAGGT GGCGGAGGAT
  TTTGAAATGC TTGAAACGAA GCCATCACAC CCACTTGAAA TAGTTTCTCT CATCTGTGTG
  ATAAGAGGTG GGTGGCAAAA ATAAGTTCAC AGAGCCTATT ACTTGGAGCT GAGATCACGG
  ATTAAATGTC TTGAATGGGG AAAAAAATGT ATTGGTTGCA CTTAGAATAT TTTCTCTGAC
  Y
  TTTCTTACCT TGAATTCAGA AAGAAGGCAG TTTTCTCATG TTGGAGGAAC GCTGACTAAT
  TCCCTGTACC TCCTTCACTG TCGAGCATCT GACTCATGTG TATTTAAGGG AACTAGCTGA
  TGACTGGACT CATGCAGCTA CGAGGAAAAC ATGGGATCCA GACCTGTTTG TTACCCTGTG
  TTCTTAGGGC CTCTTTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45549724	mCV24011774	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss135838263	ENSMUSSNP6555955	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320947066	CHEV_3_126363962	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31592819					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126454693 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			1335 bp upstream
Gm43006	predicted gene 43006			1721 bp downstream
Rr397996	regulatory region 397996			870 bp upstream
Rr584670	regulatory region 584670			1897 bp distal
Rr584671	regulatory region 584671			within coordinates
Rr584672	regulatory region 584672			818 bp proximal