rs31589986 SNP Detail

Summary

• ID
  rs31589986
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121218481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAA CAGAAGCCCT GAGGTTTGGG
  R
  TTCTAAAGGA GAGCTGGGGG TGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45549136	mCV23991465	ABI	CRAMUS_MOUSE	f	SNP		G	A
ss135720484	ENSMUSSNP2798814	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss320903380	CHEV_3_121127750	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31589986					SNP	A	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121218481 () rs orientation: forward

Symbol	Name	Function Class
Cnn3	calponin 3, acidic	1709 bp upstream
Cpgi13758	CpG island 13758	1124 bp proximal
Gm42928	predicted gene 42928	within coordinates
Rr375667	regulatory region 375667	1825 bp downstream
Rr397975	regulatory region 397975	1485 bp upstream
Rr584073	regulatory region 584073	1175 bp proximal
Rr584074	regulatory region 584074	1949 bp proximal
Tssr31441	transcription start site region 31441	1663 bp upstream
Tssr31442	transcription start site region 31442	1736 bp upstream