rs3158950 SNP Detail

Summary

• ID
  rs3158950
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37402058 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         CGGAGAGGC ACCGCGACAG AAAGGGTTAA GGCCAGGAGG
  GTGACCAAGA GAACTGCTCT GAAGAGTCAC ACACCACAGG AGTACCTCAC TGCGGGGGGT
  S
  GGGGGGGGGG AGGAGAAATG TAGATTTAGG GAAGCTTCTA GAAGTGTCAC TATGAGTTAG
  CTGTAGGTCA TCCTGAAGGG CATCTACTTA TCGTCTTCAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	NON/ShiLtJ	PWK/PhJ	SEA/GnJ	SWR/J
ss357582117	MGP_WTSI_3_37246831	EVA_MGPV3	EVA_MGPV3	r	SNP	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	NON/ShiLtJ	PWK/PhJ	SEA/GnJ	SWR/J
rs3158950					SNP	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357582117	MGP_WTSI_3_37246831	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37402058 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13096	CpG island 13096	300 bp proximal
D3Nds51	DNA segment, Chr 3, Nuffield Department of Surgery 51	1750 bp proximal
Fgf2	fibroblast growth factor 2	558 bp upstream
Fgf2os	fibroblast growth factor 2, opposite strand	within coordinates
Gm43439	predicted gene 43439	within coordinates
Rr575463	regulatory region 575463	within coordinates
Tssr28895	transcription start site region 28895	576 bp upstream
Tssr28896	transcription start site region 28896	736 bp upstream