rs31588289 SNP Detail

Summary

• ID
  rs31588289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:62404408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATGTAA ACTTGATAGA
  AAAAAATTCT TGTCAGGATC AAGGTTTTAT GTAATTAACT AGGAAGTTTC CAGTGACCAT
  CACATTACAC GTTGAGAAGG AGCTGAGGAC ATCAATACAA TGCTTTAATT TTTTTTTTTT
  CCATTACAGA TTATGGGTAG AGAGAATATG GAGACCTTAG GAAAACTGAA AGCAAAAATT
  Y
  CTTTAGAGTC TTCCGTACAA ATCTTGTTAT TAGAACCTGT TAACCTTTCA GTTTACCTTT
  TCCATTTTCA GTGCACAGAT ATTTCTATTG GAAAACTGAA ACATTGCATA AAATAAAAAC
  TGATCCCAAA ATGAATTTAA AGTGGATATG GCCATGCTGT AATCCCAGCA CTTATGAGGC
  TAAGGCAGGA GGAGCTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47568272	NES11444467	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31588289					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47568272	NES11444467	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:62404408 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddx60	DExD/H box helicase 60			Intron
				Noncoding-Transcript-Variant
Tssr77513	transcription start site region 77513			446 bp upstream
Tssr77514	transcription start site region 77514			636 bp upstream