rs31588286 SNP Detail

Summary

• ID
  rs31588286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:62403756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCTCGC TCAAGATTCA
  TCACTGCTAA TTGGATTCAG GACCTCAAGA CTGTCCTAAA AATGGTAAAT ATAATCTTCA
  TTCACTTGTA CTTCTGTTTT GACTACGTGA TATATAAAAA TCACAATAAC CTTTGAGGCA
  GATTTACACA GTGTAGTGAT AAGCATTGAG GTCTTGAGAG GTTGGTGTGC TTAAATCAGT
  Y
  ACTTGGACTA GTTTTAACAA CTGAATTAGG TAGCAATAGC AAGCATCGTG GCATGTATCC
  AACCCCAGAT TCCAGAGATT TTCCTTCTTT AAATTCTAAC CAGTACCCCC AGAGCTCCCT
  GGGACTAAAC CACCAATCAA AGAAAACACA CAGTGGGACT CATGGCTCTA GTTGCATATG
  TAGCACAGGA TGGCCTAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47568269	NES11444595	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31588286					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47568269	NES11444595	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:62403756 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddx60	DExD/H box helicase 60			Intron
				Noncoding-Transcript-Variant
Tssr77513	transcription start site region 77513			1098 bp upstream
Tssr77514	transcription start site region 77514			1288 bp upstream