rs31587350 SNP Detail

Summary

• ID
  rs31587350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:62403510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTATGGTCT CCCAGCCTGT CGTTCTTGGC TCACCATTTT
  ATTTCTTTCA GAAAACAGAT AATTGCTTAA CCCTGAAGGA CATGGAAGAC TTTTGTAAGC
  Y
  ACATTGCCTC AGTGTGGCTC TTTTGCTCCA TGTACCTCTC TCTCAGAGAG CTCGCTCAAG
  ATTCATCACT GCTAATTGGA TTCAGGACCT CAAGACTGTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47568263	NES11444593	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31587350					SNP	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47568263	NES11444593	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:62403510 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddx60	DExD/H box helicase 60			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Tssr77513	transcription start site region 77513			1344 bp upstream
Tssr77514	transcription start site region 77514			1534 bp upstream