rs31586822 SNP Detail

Summary

• ID
  rs31586822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118601411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCTGTGT GCACCTATGT
  CATCAAGACC CATCTGAACA GCAGTAGCCC TGTATGTGTG TGTGTGTGTA TGTGTGTGTG
  TGCATGTGTG CATGCACCTA CGTCATCTGA GACCCACCTG AACAGCAGTA ACACAGCCTG
  GGGGAACGTC TGGAAGTTGT TGTTCCGATT GATCTCTGTG GTGTCATTCA GGGCAATCTT
  Y
  CCAAACACCT GAAGAAAGAG GAATTGAGGG ACCCGAGAAG GACAGCACGC ACCGCTCCAG
  CCACTGTCTA ATAGTAACTC TGGGACTATC TGGCAATCAG TTTCTGATGT GACCTAGCAG
  ACACCTGCTA TTCCATGATC CCTGGACCCT GGCTCCAGCA TGGACAACTT TAGGAGGAAA
  CCTGCCTTCA GCTGTCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48067406	NES11877821	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss321925645	CHEV_6_118574468	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31586822					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48067406	NES11877821	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118601411 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr637498	regulatory region 637498			1889 bp proximal
Rr637499	regulatory region 637499			1993 bp proximal