rs3158652 SNP Detail

Summary

• ID
  rs3158652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37523707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT TTCCCCAGAC CTCCCATCAC
  Y
  CCTCGCCTAC TGAGTTCAAA GCTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45403714	mCV24336289	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss134806473	ENSMUSSNP6424001	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C	T
ss320710330	CHEV_3_37368480	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3158652					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37523707 () rs orientation: forward

Symbol	Name	Function Class
Afg2a	AFG2 AAA ATPase homolog A	Intron
Rr575484	regulatory region 575484	1184 bp distal
Rr575485	regulatory region 575485	803 bp distal
Rr575486	regulatory region 575486	within coordinates