rs3158649 SNP Detail

Summary

• ID
  rs3158649
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37522147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAA TGAGTACCTT ATGTTTTGTG
  K
  TTTTAGTTTC ATTGTAGCTA TGAGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45416358	mCV24336267	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T	G
ss134806461	ENSMUSSNP4387690	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss320710325	CHEV_3_37366920	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3158649					SNP	G	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37522147 () rs orientation: forward

Symbol	Name	Function Class
Afg2a	AFG2 AAA ATPase homolog A	Intron
Rr575484	regulatory region 575484	355 bp proximal
Rr575485	regulatory region 575485	736 bp proximal
Rr575486	regulatory region 575486	1448 bp proximal