rs3158646 SNP Detail

Summary

• ID
  rs3158646
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37522009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA TTCATAAAAA TTATTCAGCC
  T
  ATCAGCTTTC TATGTTATTT GAAAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134806449	ENSMUSSNP5441308	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320710322	CHEV_3_37366782	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs3158646					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37522009 () rs orientation: forward

Symbol	Name	Function Class
Afg2a	AFG2 AAA ATPase homolog A	Intron
Rr575484	regulatory region 575484	493 bp proximal
Rr575485	regulatory region 575485	874 bp proximal
Rr575486	regulatory region 575486	1586 bp proximal