rs3158641 SNP Detail

Summary

• ID
  rs3158641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37520761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATATTATTT TTCTGTACTT ACTGCCTTCT TGAAAACTGT CTGTTCCATT CAAATTGACC
  AGATATTGAC TGACTGGGGG GACAAGTTTT CTTTTTAATT CTTTACCTTT ATGAATTTTA
  CTCCTCTCTG ATTTATACTT GGCAAAGATT TTCTCTCAAT CTGTAGCCTG CCCCATCAGA
  TGATTATTTT TTATGTAGAA GCTTTTTAAT TTTATTTCAT TCTATTTGCT TACTTTTTAT
  TGTTACTACC TAAGTTGTTT CTATCCTTTC ACAAAGTAAT TGCATATTAT GTCTCAAACA
  R
  TGCCTTCCCC ATCCTTGTAG TTTCTAAGTG TCAGGTCTTT AGTCTTGATT TCATTTTTTT
  ATTTAATTTT TTTAGATTGT AGTATAACTA CATCATTCCT CCCCTTTTCT TCCAAACTCT
  CCTATATACC CATTGTTACA TTATTTTGTT AGTTTTGTTG TCACATGCAT ATATATTCCT
  AAATATAATC TACTTAGTCT GCTTGATATT ACTTGTGTAT ATGTCTTCAG GACTAATCAT
  TTCATATTGG ATAATCAGTT GGTATACTCT TTCCTGGAGA AAAGTTTCTC CCACTCTGAG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45407786	mCV24336265	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss134806416	ENSMUSSNP5918598	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G		A
ss320710311	CHEV_3_37365534	CHEVERUD	SCREENING_POP	f	SNP					G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs3158641					SNP	G	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37520761 () rs orientation: forward

Symbol	Name	Function Class
Afg2a	AFG2 AAA ATPase homolog A	Intron
Rr575484	regulatory region 575484	1741 bp proximal