CATTACAGCA AAGCAGATCC AGTGTGCTGT GAGCCAGAAG GCCAGGGCAG TGCTCAGGCT GCAGGCATAG CCCACAGGCT CCTTGACACT CCCAGCAACA W GATCTGAGGT CCGGAGGGTA ACTGTGCTCC TCCTCCGCCA CCAGGCTGGT GGGGCCACCT TTTTATTTTT TTAGCAGTGC TTTCAATTAC AGTGAAATG W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46912055 | NES10834026 | PERLEGEN | MM_PANEL2 | f | SNP | A | T | A | T | A | T | A | T | T | T | A | A | T | T | ||
ss320710775 | CHEV_3_37455523 | CHEVERUD | SCREENING_POP | f | SNP | A | A | ||||||||||||||
SNP Consensus Information | |||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs3158513 | SNP | A | T | A | T | A | T | A | T | T | A | T | A | A | T | A | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46912055 | NES10834026 | PERLEGEN | MM_PANEL | f | SNP | A/T |
Location: Chr3:37610750 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Afg2a | AFG2 AAA ATPase homolog A | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Gm12564 | predicted gene 12564 | 98 bp upstream | ||||||
Rr575504 | regulatory region 575504 | within coordinates | ||||||
Rr575505 | regulatory region 575505 | 930 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 03/18/2025 MGI 6.24 |
![]() |
|