rs3158499 SNP Detail

Summary

• ID
  rs3158499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37604880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATT TATGGTTTGC CTGTTTGTAT
  R
  TCTGTGCACC ACATGCATAC CTGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45549017	mCV24341121	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss134807809	ENSMUSSNP4190853	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320710745	CHEV_3_37449653	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3158499					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37604880 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
D3Ertd740e	DNA segment, Chr 3, ERATO Doi 740, expressed			1396 bp distal
Rr575499	regulatory region 575499			912 bp distal
Rr575500	regulatory region 575500			226 bp distal
Rr575501	regulatory region 575501			within coordinates
Rr575502	regulatory region 575502			1545 bp proximal