rs3158497 SNP Detail

Summary

• ID
  rs3158497
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37604015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAA AACCATAGTC ACTTTGTTTT
  R
  CTTTGGTTAT AAATTCTGAT AATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45457404	mCV24340838	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss134807800	ENSMUSSNP5542893	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320710742	CHEV_3_37448788	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs3158497					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37604015 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
D3Ertd740e	DNA segment, Chr 3, ERATO Doi 740, expressed			531 bp distal
Rr575499	regulatory region 575499			47 bp distal
Rr575500	regulatory region 575500			173 bp proximal
Rr575501	regulatory region 575501			831 bp proximal