rs31582313 SNP Detail

Summary

• ID
  rs31582313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118621906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAATCCAG CCAGAAACAG
  CAGTGGCAAC AGTAAAAGCC TCAGTGTGTC TGTGAAGGGC TGATCTTATG GAATATCATG
  GAATCCACGG TTAACTGACA CCAAGCAGAG ATAATATAAA TCGTATTACA TCAGGGTGCC
  ACTTAGATAT AACTAATCAT GGAGATTAGC GGCGTCTAAT GGAGAAGGCA TAACCAAGCA
  Y
  GCAGCTGCTC ATGATCTACA GCCTGCAAGG CAGCGAGGAC TTCTGTGTTT CCATCAGGCT
  CATCCTGTGC TGTGCTAATT CAGAAGCTTT GGACAGCTTC CTGCAGCAAA CGCCGGTCAC
  TGTAGGACAG CTGGCAAGAG CAGGCCAGGG TCGCGTCCTT GCTTTGAGGA GGCACTGGCT
  GGGATAGTGA TAGGGTACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48067736	NES11877266	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31582313					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48067736	NES11877266	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118621906 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637500	regulatory region 637500			within coordinates
Rr637501	regulatory region 637501			1614 bp proximal
Rr637502	regulatory region 637502			1892 bp proximal