rs31581570 SNP Detail

Summary

• ID
  rs31581570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118580645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCGTAAG TTTATATTTC
  TACTTAGATG TGCCAGATAT TCAAATATTG GTGAATAAAG CAGGCTTTCA GATTAGATGT
  GGCTCAGGAG TTCCTATTCC ACACCTTCTG ATGAGAAACT TCTCCAGGAA AATTCCTTTC
  TAGAAACAGG ATCCCCCTGT TCTCTGAGAG CTGGCCATCT TTTGAGCTGC TGTGTCCTAG
  R
  AGGATGGCAT GGCATGGCCT GGGCTCAGGA AGGAGGCAGA GGATCAGGAG ATAGCTGGTT
  AGGGAGAGTG GGCACTCCTC AGAGAGATAA GGCAAAACCC TGAGACTTAG TGCACGGTTG
  CCCCCGACTG AACTTCACAA AGGACACCAG TCATGGCACT TACCCTGAAG ATGTCATCTT
  CGGAGGCAGC AGACACCGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48066960	NES11878327	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G		G	A	A	G		G
ss321925458	CHEV_6_118553702	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31581570					SNP	A	A	A	A	A	A	G	A	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48066960	NES11878327	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118580645 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Gm38887	predicted gene, 38887			within coordinates
Rr637495	regulatory region 637495			1359 bp distal