rs31581564 SNP Detail

Summary

• ID
  rs31581564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118580250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAAGGTCT TATGAGAGTG
  GTGTTGTGTA TCTCTGAGGC CATTCACTGA TGGACAACTC AGTGATGCCA GGAAGGTTGC
  AAGGCTGGCC ATAGCAGGGT GGGCTGGGCT TGGTTCCCTG TGTGCTTTAT AGTCTGGGAA
  ACGGATCTGG GGACTGGGGT TGGCAGAAAG AACAAGGGAG GTAACAAGAT GGGAGACTGT
  Y
  GTTGTACGGC ACAGCAGTGT TTGATCTTTC CCACTGCATT AATATTACTC CAGAAAAAGA
  GGAGGAGGCC TGGAGGGTAC CACTGTGCCC CAGACATCAC ATGCTCCATC TTAACCGGGC
  AGCTGATGTT TGTCTGTCTG CCACATGAGA ACCCACATCG AACATGAATG CTTAACCTAC
  TTGTCCTCCA AGAAAAGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48066954	NES11878420	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		C	C	C	C		T
ss321925451	CHEV_6_118553307	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31581564					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48066954	NES11878420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118580250 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Gm38887	predicted gene, 38887			within coordinates
Rr637495	regulatory region 637495			964 bp distal