rs31580792 SNP Detail

Summary

• ID
  rs31580792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118602617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGGAAC CAAGGAAGCA
  GAGTTTCTCA TACCTGCATC CCAATCACTG CATAGATAAA GAACAGCATC ACAATCAAAA
  GAGCCACATA GGGCAGAGCC TAGAAGGAAG CAAAGAGAGG CTATGAGACC TAGCAGTACA
  GCCAGCAGGA TCATTTCCCA GAAAGCATTG CACTTCCCTG GTCCATGGCA GTCTGCTGCC
  Y
  TTTTTGACTA AGGAGGACTG AGCATCAAGG AGAGAACCTG AGAGGTGGGC TCTGGCTTTC
  CAATTCAGGA GTCTGTCTGT CTTGTTTGTA TGTATGTATG TATGTATGTA TGTATGTGTG
  TGTGTATGTA TGTATATGTA TGTGTATGTA CACACATATG TATCTATCAT CCATTCATCT
  ATCCACCCAT CTTTTGGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48067434	NES11877835	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31580792					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48067434	NES11877835	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118602617 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637498	regulatory region 637498			683 bp proximal
Rr637499	regulatory region 637499			787 bp proximal