rs31579960 SNP Detail

Summary

• ID
  rs31579960
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118579599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTCTCT CCTCTCCCCC
  TCACCCCTGC TTCCCTTGTA CGGCAGTGGT TGAGAGGCAC AGGCCACAGG GGAGCGAGCT
  TGACCTTCAG TTTGACCTCT ACCACACTCT GGACACATGG TAAAGGGAGG GACTTAGATG
  CTCGTGGCCC TACAGGTACC CTACAGCACC AGGGCAGGAA TTCCTCCTGG GCCTGGACAG
  K
  CAAGTGGTTG CTGATCTAGA AGCTTCCCTG GAAGGTTGTT CCCAAAAGAG CACTGGAGAC
  TGAGGTTGGG TTTCAGGGAC AAGTCTGAGA TGGCGTTCCC CCACAGAAGC CAGCTGTTTA
  GCTTTGGGGA GCCTGCTGGG AGTGCTGGAG GGGTGGGGAG ATGGAAGGGA AGGCAGGAAC
  TAGATTGTTT CAGTGGAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48066940	NES11878411	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31579960					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48066940	NES11878411	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118579599 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Gm38887	predicted gene, 38887			within coordinates
Rr637495	regulatory region 637495			313 bp distal