rs31575338 SNP Detail

Summary

• ID
  rs31575338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:25276577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTCTGAGAT GAAGTTTCAG TCTGTAGCTC CTACTTGCTT GGTCTAGGTT TGAACTGATG
  ATCAATTTAA TATTAATAAA ATAAGTTGTA AAAGAGAAAA CTGCTTATTT TCTTTTTAAA
  ATGAATGAGA TTAAAAATAT TACACCATAC ATGTATGAAC TGGGCCTGGG CTCCAAAACT
  GCATTTTGAC CAGTCGTGAT TTTCAGTAAT GGTCCCCATC TGTTGCCAAG GGAAGCTTCT
  GAGAAATATC AGAAAAGCTA CCCACGTGAT GTCTTGCCAA CATGGAAACC TACACATGAC
  Y
  TGAAAAAGGG GGACGTAATT AGAAATGTTG ATGAAGGGGG AGCTTCCAAG GCCTCTGCCC
  TAGGCAAAGA CTTACAGGCA GCTCAAGAAT GCTGAGAGGG GGGAGAAGTA GACTTCCCAG
  AGAAAAGCAA ATGGGTGAAT TGGCTAGCCA ATACTAAGAA GTACATGAGA GGTTTGTGGC
  ACAGGCGCCG GCGGGAGCCT TCTTGGCTCC GGGACTCCGC GGAGGGCAGG CTGCACGGGT
  GACCGGGTGG AATACAGAGT GCCAGCCATT TCTGGGACGG GCGAGAGTCG CAGAGCTTCT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45548046	mCV24227144	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs31575338					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25276577 () rs orientation: forward

Symbol	Name	Function Class
Rr374701	regulatory region 374701	within coordinates
Rr574284	regulatory region 574284	1589 bp distal