rs31575195 SNP Detail

Summary

• ID
  rs31575195
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135392887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATTAAA AAGATGGTTT
  TCCATCTCAT AAAATCCCCT TTTTGAATGG AAGACTTCCT CTTTTTGTAT TTTTTAGAGG
  GAACAGTAGG TAACTGTTAA TTATTTATAC ATTCTAATAA ACCATGAATG CACCACATAA
  AATACTGTAC TCGGGGAGCA AACACTGTTT GGGGGGCTTC TCTCTTACCA GAAGAACAGT
  R
  GGCTTTTCAT TGCCTGTTGG ATAAGGTTGC CTGTCAAAAC AAGCTAGCGA AACAATTGAA
  TGTGACTTAG CTGTTTATCA GGTGTCATCT CAGTACCAAC AAAGTCCATG CAAGGGTTGG
  AGGGGTCTCA CAGCACGGAT GAGCTGTTAC CTGCTTTTAG CTAGAACTAG AGAACTTACT
  CTTTCAAACA GCCTTTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss45548498	mCV25339270	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss135928512	ENSMUSSNP1683259	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs31575195					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135392887 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585765	regulatory region 585765	284 bp distal
Rr585766	regulatory region 585766	845 bp proximal
Tssr31841	transcription start site region 31841	1994 bp upstream
Tssr35822	transcription start site region 35822	759 bp downstream