rs31574987 SNP Detail

Summary

• ID
  rs31574987
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60523305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAG CTGTTAGCCA TGGGAGGGCG
  M
  ATGGTAAGCG AGTCAGCTGG GAAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45548138	mCV23104472	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss135219911	ENSMUSSNP6451459	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
ss320786788	CHEV_3_60419806	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31574987					SNP	C	A	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60523305 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr375058	regulatory region 375058			1203 bp upstream
Rr577443	regulatory region 577443			416 bp distal
Rr577444	regulatory region 577444			372 bp proximal
Tssr29315	transcription start site region 29315			1450 bp downstream
Tssr29316	transcription start site region 29316			1210 bp upstream
Tssr29317	transcription start site region 29317			1430 bp upstream
Tssr29318	transcription start site region 29318			1496 bp upstream
Tssr29319	transcription start site region 29319			1555 bp upstream