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rs31572847 SNP Detail
Summary
  • ID
    rs31572847
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr6:118455712 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GAGGG TGAGTGTATA TAATTCCCAG
    M
    TTCTCAGGAA AATTTAATAC TGAAA                                      
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
ss48065606 NES11724100 PERLEGEN MM_PANEL2 f SNP C A C A A C C C C C A A
ss133583028 ENSMUSSNP3869920 ENSEMBL ENSEMBL_Sanger f SNP C
ss321924618 CHEV_6_118428769 CHEVERUD SCREENING_POP f SNP C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
rs31572847 SNP C C A C A A C C C C C C A C A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss48065606 NES11724100 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:118455712 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi17903 CpG island 17903 213 bp proximal
Rr637483 regulatory region 637483 430 bp distal
Rr637484 regulatory region 637484 within coordinates
Rr637485 regulatory region 637485 559 bp proximal
Rr637486 regulatory region 637486 1758 bp proximal
Rr637487 regulatory region 637487 1919 bp proximal
Tssr62662 transcription start site region 62662 486 bp downstream
Zfp9 zinc finger protein 9 Intron

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory