rs31572847 SNP Detail

Summary

• ID
  rs31572847
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118455712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG TGAGTGTATA TAATTCCCAG
  M
  TTCTCAGGAA AATTTAATAC TGAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss48065606	NES11724100	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	A	C	C	C	C		C	A		A
ss133583028	ENSMUSSNP3869920	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321924618	CHEV_6_118428769	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31572847					SNP	C	C	A	C	A	A	C	C	C	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48065606	NES11724100	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118455712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17903	CpG island 17903	213 bp proximal
Rr637483	regulatory region 637483	430 bp distal
Rr637484	regulatory region 637484	within coordinates
Rr637485	regulatory region 637485	559 bp proximal
Rr637486	regulatory region 637486	1758 bp proximal
Rr637487	regulatory region 637487	1919 bp proximal
Tssr62662	transcription start site region 62662	486 bp downstream
Zfp9	zinc finger protein 9	Intron