GAGGG TGAGTGTATA TAATTCCCAG M TTCTCAGGAA AATTTAATAC TGAAA M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss48065606 | NES11724100 | PERLEGEN | MM_PANEL2 | f | SNP | C | A | C | A | A | C | C | C | C | C | A | A | |||
ss133583028 | ENSMUSSNP3869920 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | ||||||||||||||
ss321924618 | CHEV_6_118428769 | CHEVERUD | SCREENING_POP | f | SNP | C | C | |||||||||||||
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
||||
rs31572847 | SNP | C | C | A | C | A | A | C | C | C | C | C | C | A | C | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss48065606 | NES11724100 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr6:118455712 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi17903 | CpG island 17903 | 213 bp proximal | ||||||
Rr637483 | regulatory region 637483 | 430 bp distal | ||||||
Rr637484 | regulatory region 637484 | within coordinates | ||||||
Rr637485 | regulatory region 637485 | 559 bp proximal | ||||||
Rr637486 | regulatory region 637486 | 1758 bp proximal | ||||||
Rr637487 | regulatory region 637487 | 1919 bp proximal | ||||||
Tssr62662 | transcription start site region 62662 | 486 bp downstream | ||||||
Zfp9 | zinc finger protein 9 | Intron |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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