rs31569944 SNP Detail

Summary

• ID
  rs31569944
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152056797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGTAGG TCGGGGTGGA
  GAGGTGATGG TTGGTACTGT CAGTCTGCTT TCAGGGCTTG TAGCAACCCT GAAGTAGTGA
  GCCAGTGAGG CTGTGGTACT CATGGGAGGT AAACAAGACT GGATGGTTAC AATTGGTTAT
  GAAATCCCAA AGAAGGCACT TTGAATAGGT TTGGTGGAAG CATTACTCAA TGACTTAAAA
  S
  GCTTATTTGC CCATTCATTC ATTTTGAGAC AAGGTCTCCC TGCGTGGTCT CAGAGTGGCC
  TTGAACTAAC AGTCTTTGGC ATCCACCTCC AGGGCAGCGA TTACAGGTGT GTACTAACAC
  TCCTGGCAGT GTGTATTCCT TCACGATCGC TAATGTTATC TTCAATGAAC AAATAGAAAG
  GCTCAACCAT TTTCTTTATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45547166	mCV25024460	ABI	CRAMUS_MOUSE	f	SNP		C	C						G
ss51676331	NES14645125	PERLEGEN	MM_PANEL2	f	SNP	C		C	G	C	C	C	G	G	G	G		C	G	G		G
ss136102662	ENSMUSSNP2463078	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						G
ss321028738	CHEV_3_152014124	CHEVERUD	SCREENING_POP	f	SNP												G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31569944					SNP	C	C	C	G	C	C	C	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676331	NES14645125	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152056797 () rs orientation: forward

Symbol	Name	Function Class
Rr587536	regulatory region 587536	within coordinates
Rr587537	regulatory region 587537	764 bp proximal
Tssr32408	transcription start site region 32408	1148 bp downstream
Usp33	ubiquitin specific peptidase 33	Intron