rs31564006 SNP Detail

Summary

• ID
  rs31564006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172340649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG CGACTGACCC TGAAGAAGGG
  R
  TTCAGCCTGC AGCTGACTTG AGCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49751592	NES13027767	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		A	G	G	G		A	G	G		G
ss120011688	PARCsnp_1.19922	PARC_SEQ	INBRED	f	SNP								A		G
ss120014602	PARCsnp_1.09971	PARC_SEQ	INBRED	f	SNP								A		G
ss146194035	ENSMUSSNP3736377	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss320125800	CHEV_1_174443213	CHEVERUD	SCREENING_POP	f	SNP													G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31564006					SNP	G	G	G	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751592	NES13027767	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172340649 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	167 bp upstream
Gm57108	predicted gene, 57108	191 bp downstream
Gm70635	predicted gene, 70635	within coordinates
Rr396590	regulatory region 396590	within coordinates
Rr396591	regulatory region 396591	952 bp upstream
Rr423600	regulatory region 423600	1682 bp distal
Rr423601	regulatory region 423601	within coordinates
Rr423602	regulatory region 423602	47 bp distal
Rr423603	regulatory region 423603	121 bp proximal
Rr423604	regulatory region 423604	922 bp proximal
Rr423605	regulatory region 423605	1057 bp proximal
Rr423606	regulatory region 423606	1826 bp proximal
Tssr302	transcription start site region 302	917 bp downstream
Tssr10235	transcription start site region 10235	163 bp upstream
Tssr10236	transcription start site region 10236	1039 bp upstream
Tssr15228	transcription start site region 15228	851 bp downstream