rs31563757 SNP Detail

Summary

• ID
  rs31563757
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:118358310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTTCTTA TAATGTATTC
  AATCAACAGA TTAAAGTGTT AGCAAGAACA GCTTCTAAAA AATTCTTCAG CCCGTCCTAG
  TAAGGCAATC ACCCCAGATC CTCATAGACA AGGAGTTAGA GATGATTCGG GCGAGGGAGA
  CTGAAACTGT TAGAAATTAA GTTCAGGGTT GTATAAATGA CTGGCCACTA TTCCAACATA
  K
  GTGTCTGGAC AAGGCAAAGT TTACTCTTGG CCAGGAGGGT GTGCCCCAGA GAGCCAACCC
  AGAAACAGGA AGTACACTTA GTTTTATTCA AAGGAAGGTG CTGTGGTGAT CTGAGTAAAA
  ATGGTGTCCA CGGGTCCATA GGGAGTGTAG ATATTGGGAG GTGTGACCTG GTTGGAGTAA
  GTGTGGCCTT ACTTGGGGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48064718	NES11726759	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31563757					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48064718	NES11726759	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118358310 () rs orientation: forward

Symbol	Name	Function Class
Rr637473	regulatory region 637473	1197 bp distal
Rr637474	regulatory region 637474	1654 bp distal