rs31563282 SNP Detail

Summary

• ID
  rs31563282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172342354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA AGGCGGCGAG TGATGCAACT
  Y
  TCAAGCTTCA TACAGTTTAG AAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49751588	NES13027771	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		T	C	C	C		T	C	C		C
ss120011703	PARCsnp_1.19930	PARC_SEQ	INBRED	f	SNP						T		C
ss120014609	PARCsnp_1.09978	PARC_SEQ	INBRED	f	SNP						T		C
ss146194068	ENSMUSSNP6017332	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss320125808	CHEV_1_174444918	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31563282					SNP	C	C	C	C	C	T	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751588	NES13027771	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172342354 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	within coordinates
Gm57108	predicted gene, 57108	773 bp upstream
Gm70635	predicted gene, 70635	within coordinates
Rr396590	regulatory region 396590	1550 bp downstream
Rr396591	regulatory region 396591	453 bp downstream
Rr423601	regulatory region 423601	1585 bp distal
Rr423602	regulatory region 423602	1752 bp distal
Rr423603	regulatory region 423603	784 bp distal
Rr423604	regulatory region 423604	649 bp distal
Rr423605	regulatory region 423605	113 bp distal
Rr423606	regulatory region 423606	121 bp proximal
Tssr302	transcription start site region 302	775 bp upstream
Tssr10235	transcription start site region 10235	1530 bp downstream
Tssr10236	transcription start site region 10236	640 bp downstream
Tssr15228	transcription start site region 15228	807 bp upstream