rs31563280 SNP Detail

Summary

• ID
  rs31563280
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172342700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATTTTC AAGCACGATC
  TTGTCTTCAT ACCCCTATCC CAATCCCCCA GGGACTGGGC CTATCTTTCT TTCCCAGGAG
  GAAACCAGGC CCAGGCCAGG GTCAAGCCTT GGGAGACTTT CAAATCATTG CTGTCCTTTT
  CCGTTCTGTT CCTCCAGAGA ACACAGCATG GGAGAGCTTC CTCCTGGCCC TCCAAGACTG
  K
  ATTTTGGCTA GGAACCAGAC TCAGAAGAGA CAGCTTTGCT GAGGATCAAA TGGATACCCC
  CTAAAATGGA AGCAGAGGCT GTAGAAGACC TAGGAGATGG AGGTGACTCC TGGCCTCAGG
  AACTCTGAGG ACTGAGTGTA GAAGTTCAGA GAGATCATGA GGAGTTGCCT TATGCATGTA
  ACACAAATCC CTCTACAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45109893	mCV24953302	ABI	CRAMUS_MOUSE	f	SNP		T							G
ss49751586	NES13027773	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	G	T	G	G	G	G		G	G	G		T
ss146194082	ENSMUSSNP7042313	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							G
ss320125815	CHEV_1_174445264	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31563280					SNP	T	T	G	T	T	G	T	G	G	G	G	T	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751586	NES13027773	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172342700 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	286 bp downstream
Gm57108	predicted gene, 57108	1119 bp upstream
Gm70635	predicted gene, 70635	within coordinates
Rr396590	regulatory region 396590	1896 bp downstream
Rr396591	regulatory region 396591	799 bp downstream
Rr423601	regulatory region 423601	1931 bp distal
Rr423603	regulatory region 423603	1130 bp distal
Rr423604	regulatory region 423604	995 bp distal
Rr423605	regulatory region 423605	459 bp distal
Rr423606	regulatory region 423606	within coordinates
Tssr302	transcription start site region 302	1121 bp upstream
Tssr10235	transcription start site region 10235	1876 bp downstream
Tssr10236	transcription start site region 10236	986 bp downstream
Tssr15228	transcription start site region 15228	1153 bp upstream