rs31563279 SNP Detail

Summary

• ID
  rs31563279
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172342754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG CTTTGCTGAG GATCAAATGG
  M
  TACCCCCTAA AATGGAAGCA GAGGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49751585	NES13027774	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		A	C	C	C		A	C	C	C		C
ss120011710	PARCsnp_1.19933	PARC_SEQ	INBRED	f	SNP								A		C
ss120014612	PARCsnp_1.09981	PARC_SEQ	INBRED	f	SNP								A		C
ss146194086	ENSMUSSNP802272	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320125816	CHEV_1_174445318	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31563279					SNP	C	C	C	C	C	C	C	A	A	C	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751585	NES13027774	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172342754 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	340 bp downstream
Gm57108	predicted gene, 57108	1173 bp upstream
Gm70635	predicted gene, 70635	within coordinates
Rr396590	regulatory region 396590	1950 bp downstream
Rr396591	regulatory region 396591	853 bp downstream
Rr423601	regulatory region 423601	1985 bp distal
Rr423603	regulatory region 423603	1184 bp distal
Rr423604	regulatory region 423604	1049 bp distal
Rr423605	regulatory region 423605	513 bp distal
Rr423606	regulatory region 423606	within coordinates
Tssr302	transcription start site region 302	1175 bp upstream
Tssr10235	transcription start site region 10235	1930 bp downstream
Tssr10236	transcription start site region 10236	1040 bp downstream
Tssr15228	transcription start site region 15228	1207 bp upstream