rs31563277 SNP Detail

Summary

• ID
  rs31563277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172344645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT CTGTATTTAC ATGGTAGCTC
  R
  TATCTGTGTT CATGTGTGTT CGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49751583	NES13027764	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		A	G	G	G	A	G	G	G
ss120011723	PARCsnp_1.19940	PARC_SEQ	INBRED	f	SNP								A		G
ss120014619	PARCsnp_1.09988	PARC_SEQ	INBRED	f	SNP								A		G
ss146194115	ENSMUSSNP791211	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31563277					SNP	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751583	NES13027764	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172344645 () rs orientation: forward

Symbol	Name	Function Class
Gm70635	predicted gene, 70635	within coordinates
Rr372460	regulatory region 372460	1002 bp upstream
Rr423606	regulatory region 423606	1036 bp distal
Rr423607	regulatory region 423607	1127 bp proximal