rs31562736 SNP Detail

Summary

• ID
  rs31562736
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:96013845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACGT GAATAATTTA GAACTAAATA
  S
  ATGTCTGTTT TGGACATCAT ATGTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss45546888	mCV24943142	ABI	CRAMUS_MOUSE	f	SNP		C	C			G
ss46779632	NES10725637	PERLEGEN	MM_PANEL2	f	SNP	C		C	G	G		G	G	C		C		G
ss135513865	ENSMUSSNP4316336	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320841462	CHEV_3_95910456	CHEVERUD	SCREENING_POP	f	SNP										G		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs31562736					SNP	C	C	C	G	G	G	G	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779632	NES10725637	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96013845 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13535	CpG island 13535			1426 bp distal
Otud7b	OTU domain containing 7B			Intron
				Noncoding-Transcript-Variant
Rr581151	regulatory region 581151			1996 bp distal
Rr581152	regulatory region 581152			620 bp distal
Tssr30679	transcription start site region 30679			1962 bp downstream
Tssr30680	transcription start site region 30680			1706 bp downstream
Tssr30681	transcription start site region 30681			1988 bp upstream