rs31559817 SNP Detail

Summary

• ID
  rs31559817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172315631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGATTA TACACCTAGA
  CTTATAAGTA GGCCCACCCA TTCTAAAGAA GCCACACCCC AGGGACTAAC TGAGAGATCA
  CTGACGACTA AGCTCAGTAG CTACCCTAGA TCTATGACTC TCATCTTTCC CGTGGCTTCA
  AGGAGCACAC AGGCTGAGTT TCTGCTTCAA ATAGGCCACC CTAGAAGTAG AGTGGAAACA
  R
  CTTGGAGGAG TGGGTGGTAC CCAGGATTGC TACTATCACT ATCAGGGATG GCTGGGGTAG
  GCCGAGTGCT GAACAGGTAC ATCATCTGGG AGCTATATTT GCCTGTCCTG TGAATTTTAG
  AAAATACCAC TCGTTCACAC CAAAGGGCAA AGTGAAGATG GGCAACAGCT AAGTGTAGGG
  GGTACAGAGC CAGTGGATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49751650	NES13027973	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31559817					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751650	NES13027973	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172315631 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70813	predicted gene, 70813			1644 bp upstream
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423586	regulatory region 423586			1171 bp distal
Rr423587	regulatory region 423587			383 bp proximal
Rr423588	regulatory region 423588			1623 bp proximal