rs31558950 SNP Detail

Summary

• ID
  rs31558950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172316630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAA TAGCTCTGGG AGATTACAGG
  Y
  TTTGGTAGAT GAGGTATGGG TCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49751642	NES13027890	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	C	C	C		T	C	C	C		C
ss120011490	PARCsnp_1.19823	PARC_SEQ	INBRED	f	SNP								T		C
ss120014492	PARCsnp_1.09861	PARC_SEQ	INBRED	f	SNP								T		C
ss146193537	ENSMUSSNP4956408	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320125685	CHEV_1_174419194	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31558950					SNP	C	C	C	C	C	C	C	T	T	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751642	NES13027890	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172316630 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			1450 bp proximal
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423587	regulatory region 423587			within coordinates
Rr423588	regulatory region 423588			624 bp proximal
Rr423589	regulatory region 423589			1504 bp proximal
Rr423590	regulatory region 423590			1683 bp proximal