rs31558945 SNP Detail

Summary

• ID
  rs31558945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172317038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA AAGCTTTTAC AGAGCCCCTT
  Y
  CTTCATTCAA CACCCTTGAT TCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45173304	mCV23003478	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss49751637	NES13027895	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		C	T	T	T		C	T	T	T		T
ss120011495	PARCsnp_1.19826	PARC_SEQ	INBRED	f	SNP								C		T
ss120014498	PARCsnp_1.09867	PARC_SEQ	INBRED	f	SNP								C		T
ss146193563	ENSMUSSNP5609966	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss320125691	CHEV_1_174419602	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31558945					SNP	T	T	T	C	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751637	NES13027895	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172317038 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			1042 bp proximal
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423587	regulatory region 423587			335 bp distal
Rr423588	regulatory region 423588			216 bp proximal
Rr423589	regulatory region 423589			1096 bp proximal
Rr423590	regulatory region 423590			1275 bp proximal