rs31558491 SNP Detail

Summary

• ID
  rs31558491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171019363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCTTTTTT AAGTTGCATG TAAATGAGAT TACACTATAT
  TCAATGGAGC AACAAGTTAA AAGAGTCCTG AAGGAAAATT CATTTGGAAA GAGGCATCAG
  Y
  AGTACTGCGC CCTTGCCCTT TAGTACGACA CAGATTCAGA TAAGGCTTGG GCTCAGGTTC
  CTCACCTGTA AAATCAGAAA ATGGGGCCAA ATGATCATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45055240	mCV24420967	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss49750804	NES13033711	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T	C	C	C	C	C	C	C
ss119995983	PARCsnp_1.12069	PARC_SEQ	INBRED	f	SNP							C		T
ss119997585	PARCsnp_1.01061	PARC_SEQ	INBRED	f	SNP							C		T
ss146156141	ENSMUSSNP4878058	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31558491					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750804	NES13033711	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171019363 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	907 bp downstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423237	regulatory region 423237	1709 bp distal
Rr423238	regulatory region 423238	1448 bp distal