rs31558032 SNP Detail

Summary

• ID
  rs31558032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172458798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAT CACATGTCAG GGAACAGCAC
  Y
  TAGAATCCCA TCATCCTCAG GATGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
ss49751244	NES13026653	PERLEGEN	MM_PANEL2	f	SNP		C		C		T
ss120013313	PARCsnp_1.20735	PARC_SEQ	INBRED	f	SNP	T		C
ss120015538	PARCsnp_1.10907	PARC_SEQ	INBRED	f	SNP	T		C
ss320126686	CHEV_1_174561362	CHEVERUD	SCREENING_POP	f	SNP					C		C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
rs31558032					SNP	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751244	NES13026653	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172458798 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	mRNA-UTR
Gm35601	predicted gene, 35601	1798 bp upstream
Rr396594	regulatory region 396594	1662 bp upstream
Rr423641	regulatory region 423641	1063 bp proximal
Rr423642	regulatory region 423642	1527 bp proximal
Rr423643	regulatory region 423643	1721 bp proximal
Rr423644	regulatory region 423644	1826 bp proximal
Tssr10245	transcription start site region 10245	1833 bp upstream
Tssr15247	transcription start site region 15247	1560 bp downstream
Tssr15248	transcription start site region 15248	1584 bp downstream
Tssr15249	transcription start site region 15249	1700 bp downstream