rs31558031 SNP Detail

Summary

• ID
  rs31558031
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172459074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTC TCGGCCATCC TGCCGGCCAC
  R
  TTATGGCTTT GGGGAAGGAC TACTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss45181813	mCV27569165	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss49751243	NES13026655	PERLEGEN	MM_PANEL2	f	SNP				A		A		G		A
ss120013318	PARCsnp_1.20737	PARC_SEQ	INBRED	f	SNP			G		A
ss120015542	PARCsnp_1.10911	PARC_SEQ	INBRED	f	SNP			G		A
ss146197832	ENSMUSSNP4484733	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320126690	CHEV_1_174561638	CHEVERUD	SCREENING_POP	f	SNP							A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs31558031					SNP	A	A	G	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751243	NES13026655	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172459074 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	mRNA-UTR
Gm35601	predicted gene, 35601	1522 bp upstream
Rr396594	regulatory region 396594	1386 bp upstream
Rr423641	regulatory region 423641	787 bp proximal
Rr423642	regulatory region 423642	1251 bp proximal
Rr423643	regulatory region 423643	1445 bp proximal
Rr423644	regulatory region 423644	1550 bp proximal
Tssr10245	transcription start site region 10245	1557 bp upstream
Tssr15247	transcription start site region 15247	1284 bp downstream
Tssr15248	transcription start site region 15248	1308 bp downstream
Tssr15249	transcription start site region 15249	1424 bp downstream