rs31558030 SNP Detail

Summary

• ID
  rs31558030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172459376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCA GTGCGGCCAA AGCCTAGGGC
  R
  CAGTGCACTC CAACAGCCTG TGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
ss45163323	mCV27569167	ABI	CRAMUS_MOUSE	f	SNP	G	G	A		G
ss49751242	NES13026658	PERLEGEN	MM_PANEL2	f	SNP				G		G		A
ss120013319	PARCsnp_1.20738	PARC_SEQ	INBRED	f	SNP			A		G
ss120015544	PARCsnp_1.10913	PARC_SEQ	INBRED	f	SNP			A		G
ss146197839	ENSMUSSNP3738753	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			G
ss320126692	CHEV_1_174561940	CHEVERUD	SCREENING_POP	f	SNP							G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
rs31558030					SNP	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751242	NES13026658	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172459376 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	Coding-Synonymous
Gm35601	predicted gene, 35601	1220 bp upstream
Rr396594	regulatory region 396594	1084 bp upstream
Rr423641	regulatory region 423641	485 bp proximal
Rr423642	regulatory region 423642	949 bp proximal
Rr423643	regulatory region 423643	1143 bp proximal
Rr423644	regulatory region 423644	1248 bp proximal
Rr423645	regulatory region 423645	1996 bp proximal
Tssr10245	transcription start site region 10245	1255 bp upstream
Tssr15247	transcription start site region 15247	982 bp downstream
Tssr15248	transcription start site region 15248	1006 bp downstream
Tssr15249	transcription start site region 15249	1122 bp downstream