rs31558029 SNP Detail

Summary

• ID
  rs31558029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172460312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCACAAA TTGGTCGATC TGTTCCGGGG ACGGCGGGCA
  AAAGTCAGGG ATGCGCATTC GGTGCAGCGT GAGGCCGGGA CAGCTGTCAC TGTGAGGGGG
  Y
  CCGCGCTCCG TCAGGGACAC CAGGTGCCGC ACACCCTGGT CCAGCAGGAA CTGGTAGTGC
  GCGGGCAGCC GGGGCAACGC CAGTCCGGCC AGCCGTCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
ss49751241	NES13026611	PERLEGEN	MM_PANEL2	f	SNP			C		T		T
ss120013323	PARCsnp_1.20740	PARC_SEQ	INBRED	f	SNP		T		C
ss120015550	PARCsnp_1.10919	PARC_SEQ	INBRED	f	SNP		T		C
ss146197859	ENSMUSSNP4199842	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss320126696	CHEV_1_174562876	CHEVERUD	SCREENING_POP	f	SNP						T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
rs31558029					SNP	C	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751241	NES13026611	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172460312 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	Coding-Synonymous
Gm35601	predicted gene, 35601	284 bp upstream
Rr396594	regulatory region 396594	148 bp upstream
Rr423641	regulatory region 423641	107 bp distal
Rr423642	regulatory region 423642	13 bp proximal
Rr423643	regulatory region 423643	207 bp proximal
Rr423644	regulatory region 423644	312 bp proximal
Rr423645	regulatory region 423645	1060 bp proximal
Tssr10245	transcription start site region 10245	319 bp upstream
Tssr15247	transcription start site region 15247	46 bp downstream
Tssr15248	transcription start site region 15248	70 bp downstream
Tssr15249	transcription start site region 15249	186 bp downstream