rs31558027 SNP Detail

Summary

• ID
  rs31558027
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172460677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCTTTC CTACTCTGCC
  GGGAGATTGG GTCACCCCCC CTCTGGGGCT GGATTCCGTC CCCGCTCAGC ACTTGCCCTA
  GCGGGCCACG TAGTCTCTTG GACCCTCCCC CGTGACGCTC CTCCCCACCC AGGGTTGGCT
  GAACAGCGGG GGCGGGGCTA AGACGGCTCC AAGGCAGGCA GAGAAACCCT ACAGCCCAAC
  K
  GACGCGAGCA GGGCACTCGT TGATAGGCTG GGTAATCAAC AACAAGCGTG ATTATTGCAG
  CGGGGAGTGA AGGCACTAAG GAAGCCTGGA ACCAATTAAT TGCTCCTGTA GAGAAAACAG
  CCCAGGGCTG GGCTCTGCTG CTCCCTGGTG GTGCGTTGGA GCTACTGCAT CGTGGGCCAG
  CCGCCTAACG GCCTGGTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss49751239	NES13026613	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs31558027					SNP	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751239	NES13026613	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172460677 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	173 bp upstream
Gm35601	predicted gene, 35601	within coordinates
Rr396594	regulatory region 396594	within coordinates
Rr423641	regulatory region 423641	472 bp distal
Rr423642	regulatory region 423642	331 bp distal
Rr423643	regulatory region 423643	54 bp distal
Rr423644	regulatory region 423644	within coordinates
Rr423645	regulatory region 423645	695 bp proximal
Tssr10245	transcription start site region 10245	35 bp downstream
Tssr15247	transcription start site region 15247	301 bp upstream
Tssr15248	transcription start site region 15248	241 bp upstream
Tssr15249	transcription start site region 15249	167 bp upstream