rs31558026 SNP Detail

Summary

• ID
  rs31558026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172461749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGAAGAGC AGCCAGTGCT CTTAACTGCT GAGCCATTGT
  TCTGTCCCCC TCTCCAGAAT CTTTTAATGG CACACTTTCC TACAGTCATC CAGGAAATGA
  Y
  AGTGTTACAC AGCCATCTTC ACATTCTTCC AAACATTTTG TGTTTAAAAC CCTGGGTATT
  TTCTTAACCG GGGGCCTAGG GACATACTGA CCTAAGCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
ss49751238	NES13026602	PERLEGEN	MM_PANEL2	f	SNP			T		C		C
ss120013346	PARCsnp_1.20751	PARC_SEQ	INBRED	f	SNP		C		T
ss120015562	PARCsnp_1.10931	PARC_SEQ	INBRED	f	SNP		C		T
ss146197902	ENSMUSSNP3736518	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss320126707	CHEV_1_174564313	CHEVERUD	SCREENING_POP	f	SNP						T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
rs31558026					SNP	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751238	NES13026602	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172461749 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	1245 bp upstream
Gm35601	predicted gene, 35601	within coordinates
Rr396594	regulatory region 396594	988 bp downstream
Rr423641	regulatory region 423641	1544 bp distal
Rr423642	regulatory region 423642	1403 bp distal
Rr423643	regulatory region 423643	1126 bp distal
Rr423644	regulatory region 423644	277 bp distal
Rr423645	regulatory region 423645	356 bp distal
Tssr10245	transcription start site region 10245	1107 bp downstream
Tssr15247	transcription start site region 15247	1373 bp upstream
Tssr15248	transcription start site region 15248	1313 bp upstream
Tssr15249	transcription start site region 15249	1239 bp upstream