rs31558025 SNP Detail

Summary

• ID
  rs31558025
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172462087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCT TTAGGGTCCT GGTATGAGGA
  W
  TAGGCTTAGG TAGAAGGTAA GAGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss49751237	NES13026603	PERLEGEN	MM_PANEL2	f	SNP				A		A		T		A
ss120013349	PARCsnp_1.20753	PARC_SEQ	INBRED	f	SNP			T		A
ss120015563	PARCsnp_1.10932	PARC_SEQ	INBRED	f	SNP			T		A
ss146197907	ENSMUSSNP3957635	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A
ss320126708	CHEV_1_174564651	CHEVERUD	SCREENING_POP	f	SNP							A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs31558025					SNP	A	A	T	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751237	NES13026603	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172462087 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	1583 bp upstream
Gm35601	predicted gene, 35601	within coordinates
Rr396594	regulatory region 396594	1326 bp downstream
Rr423641	regulatory region 423641	1882 bp distal
Rr423642	regulatory region 423642	1741 bp distal
Rr423643	regulatory region 423643	1464 bp distal
Rr423644	regulatory region 423644	615 bp distal
Rr423645	regulatory region 423645	694 bp distal
Tssr10245	transcription start site region 10245	1445 bp downstream
Tssr15247	transcription start site region 15247	1711 bp upstream
Tssr15248	transcription start site region 15248	1651 bp upstream
Tssr15249	transcription start site region 15249	1577 bp upstream